PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 219aa    MW: 24316.3 Da    PI: 7.8644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013512genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-203080256
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a+++a+++l+g+
  Cla013512 30 RYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEEAARAYDNAARSLRGA 80
               59*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-323088IPR001471AP2/ERF domain
SMARTSM003801.1E-353093IPR001471AP2/ERF domain
PROSITE profilePS5103223.4593087IPR001471AP2/ERF domain
PfamPF008473.0E-133079IPR001471AP2/ERF domain
CDDcd000181.23E-323087No hitNo description
SuperFamilySSF541712.09E-223088IPR016177DNA-binding domain
PRINTSPR003673.8E-113142IPR001471AP2/ERF domain
PRINTSPR003673.8E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRRGRPSDPF TPTEIPKSTI QTENPLKEIR YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF  60
DSAEEAARAY DNAARSLRGA KAKTNFPLHP STISIQQQIP FYQSPPDLHD SNGFGGKIEC  120
VQANRPTSSS LSSTVESFSG PRISNPLSSL SMVRRRPVQP VSPDDCHSDC DSSSSVVDDD  180
EVCVLASFRR ALPFDLNLPP PMDLVDLTGD DLQATALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213188664ATERF1
3gcc_A3e-213188664ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143195.11e-136PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_008456400.11e-136PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803391e-41ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0A0KBH01e-136A0A0A0KBH0_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000373597e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-28ethylene responsive element binding factor 4